viewport 475,475

delete all
reset
load wt_A.pdb
hide 
			 

# SS copied from DSSP!
#
alter A/1:500/,  ss='L'
alter A/5:12/,   ss='S'
alter A/14:19/,   ss='H'
alter A/37:43/,   ss='H'
alter A/45:54/,   ss='S'
alter A/67:79/,   ss='H'
alter A/88:95/,   ss='S'
alter A/96:100/,   ss='H'
alter A/106:113/,   ss='H'
alter A/116:134/,   ss='H'
alter A/137:142/,   ss='S'
alter A/150:171/,   ss='H'
alter A/179:186/,   ss='S'
alter A/188:192/,   ss='H'
alter A/198:203/,   ss='H'
alter A/207:212/,   ss='S'
alter A/251:258/,   ss='H'
alter A/266:275/,   ss='H'
alter A/284:290/,   ss='S'
alter A/291:297/,   ss='S'
alter A/328:333/,   ss='H'
alter A/338:341/,   ss='S'
alter A/341:349/,   ss='H'
alter A/354:360/,   ss='S'
alter A/364:370/,   ss='S'
alter A/374:378/,   ss='S'
alter A/381:394/,   ss='H'
alter A/398:403/,   ss='S'
alter A/412:423/,   ss='H'
alter A/466:470/,   ss='S'
alter A/472:477/,   ss='S'
alter A/491:497/,   ss='S'

color grey, (name C*)

color marine, (ss s and (resi 3:290 or resi 381:426))
color firebrick, (ss h and resi 37:43) 
color firebrick, (ss h and resi 67:79)
color firebrick, (ss h and resi 116:134)
color firebrick, (ss h and resi 150:171)
color firebrick, (ss h and resi 198:203)
color firebrick, (ss h and resi 266:275)
color firebrick, (ss h and resi 381:394)
color firebrick, (ss h and resi 412:423)
color yellow, (resi 291:380 and name CA)
color green, (resi 466:500 and name CA)
#bg_color white
#color firebrick, ss h
#color marine, ss s
#color grey, ss l

set cartoon_smooth_loops = 0
set cartoon_fancy_helices = 1
set cartoon_fancy_sheets = 1

cartoon automatic
show cartoon

			 

color grey, (name C* and not name CA)

color green, (name C* and not name CA and resi 144)

color purple, (resi 12,51,97,98,190,191,220,240,252,292,353,403,479,481 and name C* and not name C,CA )

show sticks, (resi 12,51,97,98,144,190,191,220,240,252,292,353,403,479,481 and not name N,C,O )

load wt_A.pdb, surf
hide everything, surf
color grey, surf
color blue, (surf and resi 12,51,97,98,190,191,220,240,252,292,353,403,479,481 and not name N,C,O)
color red, (surf and resi 144 and not name N,C,CA,O)
show surface, surf

set transparency=0.125



set_view (\
     0.768892467,   -0.408084095,    0.492208123,\
    -0.523480892,   -0.843804419,    0.118158519,\
     0.367108673,   -0.348514199,   -0.862419248,\
    -3.942342997,    3.310153484, -208.752059937,\
    19.338506699,   53.177547455,  104.400367737,\
   143.752075195,  273.752075195,    0.000000000 )

#turn x, 12.5

clip slab, 65

set antialias=1
set line_smooth = 1.00000
set depth_cue = 1
set specular = 1.00000
set surface_quality = 1.00000
set stick_quality = 25.00000
set sphere_quality = 2.00000
set cartoon_sampling = 14.00000
set ribbon_sampling = 10.00000
set ray_trace_fog = 1
rebuild
#ray